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blue moon (n.)

"a long time," 1821, often in phrases indicating something rarely occurring. Compare at the Greek calends (from an ancient Roman phrase alluding to the fact that the Greeks had nothing corresponding to the Roman calends), and the native in the reign of Queen Dick and Saint Geoffrey's Day "Never, there being no saint of that name," reported in Grose (1788). Nevermass "date which never comes" is from 1540s. Blue moon is suggested earliest in this couplet from 1528:

Yf they say the mone is blewe,
We must beleve that it is true.

Though this might refer to calendrical calculations by the Church. Thus the general "rareness" sense of the term is difficult to disentangle from the specific calendrical one (commonly misinterpreted as "second full moon in a calendar month," but actually a quarterly calculation). In either case, the sense of blue here is obscure. Literal blue moons do sometimes occur under extreme atmospheric conditions.

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Definitions of blue moon from WordNet

blue moon (n.)
a long time;
something that happens once in blue moon almost never happens
From wordnet.princeton.edu